Tools: tl

Tools: `tl`#

`smftools.tools.calculate_umap`(adata[, obsm, ...])	Compute UMAP embedding from an .obsm embedding, and store connectivities.
`smftools.tools.cluster_adata_on_methylation`(...)	Add clustering groups to `adata.obs` based on methylation patterns.
`smftools.tools.general_tools`
`smftools.tools.position_stats`
`smftools.tools.read_stats`
`smftools.tools.spatial_autocorrelation`
`smftools.tools.subset_adata`(adata, columns)	Add subset metadata based on categorical values in `.obs` or `.var` columns.