smftools.preprocessing.calculate_pairwise_differences

smftools.preprocessing.calculate_pairwise_differences#

Functions

calculate_pairwise_differences(arrays)

Calculate the pairwise differences for a list of h-stacked ndarrays.

smftools.preprocessing.calculate_pairwise_differences.calculate_pairwise_differences(arrays)#

Calculate the pairwise differences for a list of h-stacked ndarrays. Ignore N-positions

Parameters:

arrays (str) -- A list of ndarrays.

Returns:

a 2D array containing the pairwise differences between all arrays.

Return type:

distance_matrix (ndarray)